Databases and Links
Public Databases of Interaction Data
Data from our publications can be viewed and/or downloaded from the tabs below.
Lab Resource Databases
Trackers & Websites
Escherichia coli
- E.coli Soluble Proteins
- E.coli Membrane Proteins
- eSGA – Genome Wide Screens (eSGA)
- E.coli DNA Repair eMap
- E.coli Transcription Factors eMap
Saccharomyces cerevisiae
Homo sapiens
Sample Shipment Tracker
MS Sample Submission Forms
Strain Collection Locations
Escherichia coli
E.coli SPA Tag Clone Collection
- SPA Tag Clones (updated:Aug 29,2013)
- SPA Tag Clones (Viktor, TF)
- BW25113 SPA Tag Essential Clones (From Typas_Gross_Collection)
E.coli SPA Tag to YFP Collection
E.coli HfrC Collection
E.coli KEIO Knockout Collection
E.coli ASKA Barcoded Collection
E.coli ASKA Over-Expression Collection
Saccharomyces cerevisiae
S.cerevisiae GFP Collection
S.cerevisiae MORF Collection
S.cerevisiae SGA deletion strains Collection
- SGA-Mat-a-collection-Nydia-July-2013.xls (received - Jul 2013)
S.cerevisiae TS allelles Collection
S.cerevisiae TAP tag collection
Homo sapiens
cDNA Collection
Antibody Collection
- 192 ND Antibody Collectiom
- Antibodies from Hang-Aug 2015-updated collection
- Lab 232 +4 degree antibodies (Sep 19 ,2017).xlsx
Plasmid Collection
In-house stable cell lines & plasmids(Nancy)
PRIDE
Proteomic
Rewiring of the Human Mitochondrial Interactome During Neuronal Reprogramming Reveals Regulators of the Respirasome and Neurogenesis
Global landscape of cell envelope protein complexes in Escherichia coli.
Babu et al.(2018)
A Map of Human Mitochondrial Protein Interactions Linked to Neurodegeneration Reveals New Molecular Determinants in Redox Homeostasis and NF-κB Signaling.
Malty et al. (2017)
IntAct
Proteomic
Binary Protein-protein Interaction Landscape of Escherichia coli.
Rajagopala et al (Nat Biotechnol. 2014)
BioGRID
Proteomic
Rewiring of the Human Mitochondrial Interactome during Neuronal Reprogramming Reveals Regulators of the Respirasome and Neurogenesis.
Moutaoufik et al. (iScience, 2019)
Global landscape of cell envelope protein complexes in Escherichia coli.
Babu et al. (Nat. Biotechnol., 2018
A Map of Human Mitochondrial Protein Interactions Linked to Neurodegeneration Reveals New Mechanisms of Redox Homeostasis and NF-κB Signaling.
Malty et al. (Cell Syst., 2017)
Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae.
Babu et al. (Nature, 2012)
Genetic
Conditional Epistatic Interaction Maps Reveal Global Functional Rewiring of Genome Integrity Pathways in Escherichia coli. Kumar et al.
(Cell Rep., 2016)
DIP
Proteomic
Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins
Hu et al. (PLoS Biology 2009)
Project Data Repository Webportals
Proteomic
- Human Mitochondrial Proteome – Human Mitochondrial Proteome database
- E.coli Membrane – E. coli membrane protein database
- Yeast soluble – TAP interactome database
- Yeast membrane – TAP interactome database
- Yeast mitochondria – TAP interactome database
Genetic
- eSGA – Genome Wide Screens (eSGA)
- Cell Envelope – Epistatic Mini-array Profile(eMap)
- DNA Repair – Epistatic Mini-array Profile(eMap)
Project Data Repository Webportals
Proteomic
- Human Mitochondrial Proteome – Human Mitochondrial Proteome database
- E.coli Membrane – E. coli membrane protein database
- Yeast soluble – TAP interactome database
- Yeast membrane – TAP interactome database
- Yeast mitochondria – TAP interactome database
Genetic
- eSGA – Genome Wide Screens (eSGA)
- Cell Envelope – Epistatic Mini-array Profile(eMap)
- DNA Repair – Epistatic Mini-array Profile(eMap)
Lab Resource Collections
Escherichia coli
- Sequential peptide affinity tagging collection
- Yellow fluorescent protein tagging collection
- GFP free over expression collection with histidine tag
- F- Single gene deletion knockout collection
- Hfr gene deletion knockout collection
Saccharomyces Cerevisiae
- Tandem affinity tag collection
- MORF over expression collection
- GFP collection
- Single gene deletion knockout collection
Homo Sapiens
- Lentiviral flag tag constructs
- Mammalian cDNA clones
- Cell lines and plasmids
- Addgene Plasmids
